ehrapy

ehrapy is a modular open-source Python framework designed for exploratory end-to-end analysis of heterogeneous epidemiology and electronic health record data.

Installation

New to ehrapy? Check out the installation guide.

Installation

API reference

The API reference contains a detailed description of the ehrapy API.

API

Tutorials

The tutorials walk you through real-world applications of ehrapy.

Tutorials

Discussion

Need help? Reach out on our forum to get your questions answered!

https://discourse.scverse.org/

GitHub

Found a bug? Interested in improving ehrapy? Checkout our GitHub for the latest developments.

https://github.com/theislab/ehrapy

Citation

Read more about ehrapy in the associated publication.

@article{Heumos2024,
  author = {Heumos, Lukas and Ehmele, Philipp and Treis, Tim and Upmeier zu Belzen, Julius and Roellin, Eljas and May, Lilly and Namsaraeva, Altana and Horlava, Nastassya and Shitov, Vladimir A. and Zhang, Xinyue and Zappia, Luke and Knoll, Rainer and Lang, Niklas J. and Hetzel, Leon and Virshup, Isaac and Sikkema, Lisa and Curion, Fabiola and Eils, Roland and Schiller, Herbert B. and Hilgendorff, Anne and Theis, Fabian J.},
  year = {2024},
  month = {11},
  day = {01},
  title = {An open-source framework for end-to-end analysis of electronic health record data},
  journal = {Nature Medicine},
  volume = {30},
  number = {11},
  pages = {3369--3380},
  issn = {1546-170X},
  doi = {10.1038/s41591-024-03214-0},
  url = {https://doi.org/10.1038/s41591-024-03214-0}
}