Index A | C | D | E | F | G | H | I | K | L | M | N | O | P | Q | R | S | T | U | V | W A autosave (ehrapy._settings.EhrapyConfig attribute) autoshow (ehrapy._settings.EhrapyConfig attribute) C cache_compression (ehrapy._settings.EhrapyConfig attribute) cachedir (ehrapy._settings.EhrapyConfig attribute) categories_to_ignore (ehrapy._settings.EhrapyConfig attribute) catplot() (in module ehrapy.plot) causal_effect() (in module ehrapy.plot) causal_inference() (in module ehrapy.tools) clip_quantile() (in module ehrapy.preprocessing) clustermap() (in module ehrapy.plot) CohortTracker (class in ehrapy.tools) combat() (in module ehrapy.preprocessing) cox_ph() (in module ehrapy.tools) cox_ph_forestplot() (in module ehrapy.plot) D datasetdir (ehrapy._settings.EhrapyConfig attribute) dendrogram() (in module ehrapy.plot) (in module ehrapy.tools) detect_bias() (in module ehrapy.preprocessing) diffmap() (in module ehrapy.plot) (in module ehrapy.tools) dotplot() (in module ehrapy.plot) dpt() (in module ehrapy.tools) dpt_groups_pseudotime() (in module ehrapy.plot) dpt_timeseries() (in module ehrapy.plot) draw_graph() (in module ehrapy.plot) (in module ehrapy.tools) E EhrapyConfig (class in ehrapy._settings) embedding() (in module ehrapy.plot) embedding_density() (in module ehrapy.plot) (in module ehrapy.tools) encode() (in module ehrapy.preprocessing) explicit_impute() (in module ehrapy.preprocessing) F figdir (ehrapy._settings.EhrapyConfig attribute) file_format_data (ehrapy._settings.EhrapyConfig attribute) file_format_figs (ehrapy._settings.EhrapyConfig attribute) filter_features() (in module ehrapy.preprocessing) filter_observations() (in module ehrapy.preprocessing) filter_rank_features_groups() (in module ehrapy.tools) G glm() (in module ehrapy.tools) H heatmap() (in module ehrapy.plot) highly_variable_features() (in module ehrapy.preprocessing) I ingest() (in module ehrapy.tools) K kaplan_meier() (in module ehrapy.plot) (in module ehrapy.tools) knn_impute() (in module ehrapy.preprocessing) L leiden() (in module ehrapy.tools) locf_impute() (in module ehrapy.preprocessing) log_logistic_aft() (in module ehrapy.tools) log_norm() (in module ehrapy.preprocessing) M matrixplot() (in module ehrapy.plot) max_memory (ehrapy._settings.EhrapyConfig attribute) maxabs_norm() (in module ehrapy.preprocessing) mcar_test() (in module ehrapy.preprocessing) mice_forest_impute() (in module ehrapy.preprocessing) minmax_norm() (in module ehrapy.preprocessing) miss_forest_impute() (in module ehrapy.preprocessing) missing_values_barplot() (in module ehrapy.plot) missing_values_dendrogram() (in module ehrapy.plot) missing_values_heatmap() (in module ehrapy.plot) missing_values_matrix() (in module ehrapy.plot) N n_jobs (ehrapy._settings.EhrapyConfig attribute) N_PCS (ehrapy._settings.EhrapyConfig attribute) ncp() (in module ehrapy.plot) (in module ehrapy.tools) ncp_cluster_trajectories() (in module ehrapy.plot) neighbors() (in module ehrapy.preprocessing) nelson_aalen() (in module ehrapy.tools) O offset_negative_values() (in module ehrapy.preprocessing) ols() (in module ehrapy.plot) (in module ehrapy.tools) P paga() (in module ehrapy.plot) (in module ehrapy.tools) paga_compare() (in module ehrapy.plot) paga_path() (in module ehrapy.plot) pca() (in module ehrapy.plot) (in module ehrapy.preprocessing) pca_loadings() (in module ehrapy.plot) pca_overview() (in module ehrapy.plot) pca_variance_ratio() (in module ehrapy.plot) plot_cohort_barplot() (ehrapy.tools.CohortTracker method) plot_flowchart() (ehrapy.tools.CohortTracker method) plot_suffix (ehrapy._settings.EhrapyConfig attribute) power_norm() (in module ehrapy.preprocessing) Q qc_lab_measurements() (in module ehrapy.preprocessing) qc_metrics() (in module ehrapy.preprocessing) quantile_norm() (in module ehrapy.preprocessing) R rank_features_groups() (in module ehrapy.plot) (in module ehrapy.tools) rank_features_groups_dotplot() (in module ehrapy.plot) rank_features_groups_heatmap() (in module ehrapy.plot) rank_features_groups_matrixplot() (in module ehrapy.plot) rank_features_groups_stacked_violin() (in module ehrapy.plot) rank_features_groups_tracksplot() (in module ehrapy.plot) rank_features_groups_violin() (in module ehrapy.plot) rank_features_supervised() (in module ehrapy.plot) (in module ehrapy.tools) ranking() (in module ehrapy.plot) regress_out() (in module ehrapy.preprocessing) robust_scale_norm() (in module ehrapy.preprocessing) S sample() (in module ehrapy.preprocessing) sankey_diagram() (in module ehrapy.plot) sankey_diagram_time() (in module ehrapy.plot) scale_norm() (in module ehrapy.preprocessing) scatter() (in module ehrapy.plot) set_figure_params() (ehrapy._settings.EhrapyConfig method) simple_impute() (in module ehrapy.preprocessing) stacked_violin() (in module ehrapy.plot) summarize_measurements() (in module ehrapy.preprocessing) T test_kmf_logrank() (in module ehrapy.tools) test_nested_f_statistic() (in module ehrapy.tools) timeseries() (in module ehrapy.plot) tracked_steps (ehrapy.tools.CohortTracker attribute) tracked_tables (ehrapy.tools.CohortTracker attribute) tracksplot() (in module ehrapy.plot) tsne() (in module ehrapy.plot) (in module ehrapy.tools) U umap() (in module ehrapy.plot) (in module ehrapy.tools) V variable_correlations() (in module ehrapy.plot) (in module ehrapy.preprocessing) variable_dependencies() (in module ehrapy.plot) verbosity (ehrapy._settings.EhrapyConfig attribute) violin() (in module ehrapy.plot) W weibull() (in module ehrapy.tools) weibull_aft() (in module ehrapy.tools) winsorize() (in module ehrapy.preprocessing) writedir (ehrapy._settings.EhrapyConfig attribute)
