ehrapy.data.mimic_2#

ehrapy.data.mimic_2(encoded=False, columns_obs_only=None)[source]#

Loads the MIMIC-II dataset.

More details: https://physionet.org/content/mimic2-iaccd/1.0/

Parameters:

  • encoded (bool) – Whether to return an already encoded object

  • columns_obs_only (Union[dict[str, list[str]], list[str], None]) – Columns to include in obs only and not X.

Return type:

AnnData

Returns:

AnnData object of the MIMIC-II dataset

Examples

>>> import ehrapy as ep
>>> adata = ep.dt.mimic_2(encoded=True)