ehrapy.plot.catplot

ehrapy.plot.catplot(edata, x=None, y=None, hue=None, kind='strip', **kwargs)

Plot categorical data.

Wrapper around seaborn.catplot. Typically used to show the behaviour of one numerical variable with respect to one or several categorical variables.

Considers edata.obs only.

Parameters:

• edata (EHRData | AnnData) – Central data object.

• x (str, default: None) – Variable to plot on the x-axis.

• y (str, default: None) – Variable to plot on the y-axis.

• hue (str, default: None) – Variable to plot as different colors.

• kind (str, default: 'strip') – Kind of plot to make. Options are: “point”, “bar”, “strip”, “swarm”, “box”, “violin”, “boxen”, or “count”.

• **kwargs – Keyword arguments for seaborn.catplot.

Return type:

FacetGrid

Returns:

A Seaborn FacetGrid object for further modifications.

Examples

>>> import ehrdata as ed
>>> import ehrapy as ep
>>> edata = ed.dt.diabetes_130_fairlearn()
>>> ep.ad.move_to_obs(edata, ["A1Cresult", "admission_source_id"], copy_obs=True)
>>> edata.obs["A1Cresult_measured"] = ~edata.obs["A1Cresult"].isna()
>>> ep.pl.catplot(
...     edata=edata,
...     y="A1Cresult_measured",
...     x="admission_source_id",
...     kind="point",
...     ci=95,
...     join=False,
... )