AnnData utilities

AnnData utilities#

anndata.infer_feature_types

Infer feature types from AnnData object.

anndata.feature_type_overview

Print an overview of the feature types and encoding modes in the AnnData object.

anndata.replace_feature_types

Correct the feature types for a list of features inplace.

anndata.df_to_anndata

Transform a given Pandas DataFrame into an AnnData object.

anndata.anndata_to_df

Transform an AnnData object to a Pandas DataFrame.

anndata.move_to_obs

Move inplace or copy features from X to obs.

anndata.move_to_x

Move features from obs to X inplace.

get.obs_df

Return values for observations in adata.

get.var_df

Return values for observations in adata.

get.rank_features_groups_df

ehrapy.tools.rank_features_groups() results in the form of a DataFrame.